A B C D E F G I M N O P R S T V W 

A

addHeaderUnrecognizedLine(String) - Method in class imcacat.jcbf.CbfMetadata
 

B

Base64 - Class in imcacat.jcbf
I am a base 64 codec implementing the "base64" encoding in RFC 4648.
Base64() - Constructor for class imcacat.jcbf.Base64
 
ByteArrayCbfData - Class in imcacat.jcbf
I am a CbfData backed by an array of bytes.
ByteArrayCbfData(byte[]) - Constructor for class imcacat.jcbf.ByteArrayCbfData
 

C

canDecodeInput(Object) - Method in class imcacat.jcbf.CbfImageReaderSpi
 
canEncodeImage(ImageTypeSpecifier) - Method in class imcacat.jcbf.CbfImageWriterSpi
 
canNodeAppear(String, ImageTypeSpecifier) - Method in class imcacat.jcbf.CbfMetadataFormat
 
canOffsetTiles() - Method in class imcacat.jcbf.CbfImageWriteParam
 
canSetSourceRenderSize() - Method in class imcacat.jcbf.CbfImageReadParam
 
canWriteCompressed() - Method in class imcacat.jcbf.CbfImageWriteParam
 
canWriteProgressive() - Method in class imcacat.jcbf.CbfImageWriteParam
 
canWriteTiles() - Method in class imcacat.jcbf.CbfImageWriteParam
 
CbfCompression - Enum in imcacat.jcbf
I am the type of compression used to compress the data of a CBF image.
CbfData - Interface in imcacat.jcbf
I am an interface for reading CBF image data.
CbfElementType - Enum in imcacat.jcbf
I am the type of an element in the data of a CBF image.
CbfImageReader - Class in imcacat.jcbf
I read a minimal CBF (miniCBF) image as produced by DECTRIS PILATUS detectors.
CbfImageReader(ImageReaderSpi) - Constructor for class imcacat.jcbf.CbfImageReader
 
CbfImageReaderSpi - Class in imcacat.jcbf
I am a reader SPI for CBF images.
CbfImageReaderSpi() - Constructor for class imcacat.jcbf.CbfImageReaderSpi
 
CbfImageReadParam - Class in imcacat.jcbf
I am an ImageReadParam for CbfImageReader.
CbfImageReadParam() - Constructor for class imcacat.jcbf.CbfImageReadParam
 
CbfImageWriteParam - Class in imcacat.jcbf
I am an ImageWriteParam for CbfImageWriter.
CbfImageWriteParam() - Constructor for class imcacat.jcbf.CbfImageWriteParam
 
CbfImageWriter - Class in imcacat.jcbf
I write a minimal CBF (miniCBF) image like that produced by DECTRIS PILATUS detectors.
CbfImageWriter(ImageWriterSpi) - Constructor for class imcacat.jcbf.CbfImageWriter
 
CbfImageWriterSpi - Class in imcacat.jcbf
I am a writer SPI for CBF images.
CbfImageWriterSpi() - Constructor for class imcacat.jcbf.CbfImageWriterSpi
 
CbfMetadata - Class in imcacat.jcbf
I am the metadata for a CBF image.
CbfMetadata() - Constructor for class imcacat.jcbf.CbfMetadata
 
CbfMetadataFormat - Class in imcacat.jcbf
I am the metadata format for a CBF image.
CbfMetadataFormat() - Constructor for class imcacat.jcbf.CbfMetadataFormat
 
compatibleWith(CbfElementType) - Method in enum imcacat.jcbf.CbfCompression
 
COMPRESSION_BYTE_OFFSET - Static variable in class imcacat.jcbf.CbfImageWriteParam
 
COMPRESSION_NONE - Static variable in class imcacat.jcbf.CbfImageWriteParam
 
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class imcacat.jcbf.CbfImageWriter
 
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class imcacat.jcbf.CbfImageWriter
 
createReaderInstance(Object) - Method in class imcacat.jcbf.CbfImageReaderSpi
 
createWriterInstance(Object) - Method in class imcacat.jcbf.CbfImageWriterSpi
 

D

decode(String) - Static method in class imcacat.jcbf.Base64
 

E

encode(byte[]) - Static method in class imcacat.jcbf.Base64
 

F

fromDataBufferType(int) - Static method in enum imcacat.jcbf.CbfElementType
 

G

getAsTree(String) - Method in class imcacat.jcbf.CbfMetadata
 
getByte() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getByte() - Method in interface imcacat.jcbf.CbfData
 
getByte() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getCompressionTypes() - Method in class imcacat.jcbf.CbfImageWriteParam
 
getDataBlockName() - Method in class imcacat.jcbf.CbfMetadata
 
getDataCompression() - Method in class imcacat.jcbf.CbfMetadata
 
getDataElementByteOrder() - Method in class imcacat.jcbf.CbfMetadata
 
getDataElementType() - Method in class imcacat.jcbf.CbfMetadata
 
getDataHeight() - Method in class imcacat.jcbf.CbfMetadata
 
getDataId() - Method in class imcacat.jcbf.CbfMetadata
 
getDataMd5() - Method in class imcacat.jcbf.CbfMetadata
 
getDataNumElements() - Method in class imcacat.jcbf.CbfMetadata
 
getDataPadding() - Method in class imcacat.jcbf.CbfMetadata
 
getDataSize() - Method in class imcacat.jcbf.CbfMetadata
 
getDataWidth() - Method in class imcacat.jcbf.CbfMetadata
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class imcacat.jcbf.CbfImageWriter
 
getDefaultReadParam() - Method in class imcacat.jcbf.CbfImageReader
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class imcacat.jcbf.CbfImageWriter
 
getDefaultWriteParam() - Method in class imcacat.jcbf.CbfImageWriter
 
getDescription(Locale) - Method in class imcacat.jcbf.CbfImageReaderSpi
 
getDescription(Locale) - Method in class imcacat.jcbf.CbfImageWriterSpi
 
getDouble() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getDouble() - Method in interface imcacat.jcbf.CbfData
 
getDouble() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getFloat() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getFloat() - Method in interface imcacat.jcbf.CbfData
 
getFloat() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getHeaderAlpha() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderAngleIncrement() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderBeamXY() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderChi() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderChiIncrement() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderComment() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderConvention() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderCountCutoff() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDate() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetector() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetector2Theta() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetectorDescription() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetectorDistance() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetectorName() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetectorSerialNumber() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderDetectorVOffset() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderEnergyRange() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderExcludedPixels() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderExposurePeriod() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderExposureTime() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderFilterTransmission() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderFlatField() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderFlux() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderFluxString() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderGainType() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderGainVrf() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderImagePath() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderKappa() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderNumExcludedPixels() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderNumOscillations() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderOmega() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderOmegaIncrement() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderOscillationAxis() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderPhi() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderPhiIncrement() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderPixelSize() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderPolarization() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderPositionIncrement() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderSensorThickness() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderSensorType() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderShutterTime() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderStartAngle() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderStartPosition() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderTau() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderThreshold() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderTrim() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderTrimDirectory() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderTrimFile() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderUnrecognizedLines() - Method in class imcacat.jcbf.CbfMetadata
 
getHeaderWavelength() - Method in class imcacat.jcbf.CbfMetadata
 
getHeight(int) - Method in class imcacat.jcbf.CbfImageReader
 
getIdentifier() - Method in class imcacat.jcbf.CbfMetadata
 
getImageMetadata(int) - Method in class imcacat.jcbf.CbfImageReader
 
getImageTypes(int) - Method in class imcacat.jcbf.CbfImageReader
 
getInt() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getInt() - Method in interface imcacat.jcbf.CbfData
 
getInt() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getLong() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getLong() - Method in interface imcacat.jcbf.CbfData
 
getLong() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getNumImages(boolean) - Method in class imcacat.jcbf.CbfImageReader
 
getShort() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getShort() - Method in interface imcacat.jcbf.CbfData
 
getShort() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getStreamMetadata() - Method in class imcacat.jcbf.CbfImageReader
 
getUbyte() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getUbyte() - Method in interface imcacat.jcbf.CbfData
 
getUbyte() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getUint() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getUint() - Method in interface imcacat.jcbf.CbfData
 
getUint() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getUshort() - Method in class imcacat.jcbf.ByteArrayCbfData
 
getUshort() - Method in interface imcacat.jcbf.CbfData
 
getUshort() - Method in class imcacat.jcbf.ImageInputStreamCbfData
 
getWidth(int) - Method in class imcacat.jcbf.CbfImageReader
 

I

ID - Static variable in class imcacat.jcbf.Version
 
ImageInputStreamCbfData - Class in imcacat.jcbf
I am a CbfData backed by an ImageInputStream.
ImageInputStreamCbfData(ImageInputStream) - Constructor for class imcacat.jcbf.ImageInputStreamCbfData
 
ImageJCbfReader - Class in imcacat.jcbf
I am an ImageJ plug-in for reading a CBF image.
ImageJCbfReader() - Constructor for class imcacat.jcbf.ImageJCbfReader
 
imcacat.jcbf - package imcacat.jcbf
 
isReadOnly() - Method in class imcacat.jcbf.CbfMetadata
 
isSigned() - Method in enum imcacat.jcbf.CbfElementType
 

M

mergeTree(String, Node) - Method in class imcacat.jcbf.CbfMetadata
 

N

NATIVE_FORMAT_NAME - Static variable in class imcacat.jcbf.CbfMetadata
 

O

order(ByteOrder) - Method in class imcacat.jcbf.ByteArrayCbfData
 
order(ByteOrder) - Method in interface imcacat.jcbf.CbfData
 
order(ByteOrder) - Method in class imcacat.jcbf.ImageInputStreamCbfData
 

P

parse(String) - Static method in enum imcacat.jcbf.CbfCompression
 
parse(String) - Static method in enum imcacat.jcbf.CbfElementType
 

R

read(int, ImageReadParam) - Method in class imcacat.jcbf.CbfImageReader
Reads a CBF image.
reset() - Method in class imcacat.jcbf.CbfMetadata
 
run(String) - Method in class imcacat.jcbf.ImageJCbfReader
 

S

setDataBlockName(String) - Method in class imcacat.jcbf.CbfMetadata
 
setDataCompression(CbfCompression) - Method in class imcacat.jcbf.CbfMetadata
 
setDataElementByteOrder(ByteOrder) - Method in class imcacat.jcbf.CbfMetadata
 
setDataElementType(CbfElementType) - Method in class imcacat.jcbf.CbfMetadata
 
setDataHeight(int) - Method in class imcacat.jcbf.CbfMetadata
 
setDataId(int) - Method in class imcacat.jcbf.CbfMetadata
 
setDataMd5(byte[]) - Method in class imcacat.jcbf.CbfMetadata
 
setDataNumElements(int) - Method in class imcacat.jcbf.CbfMetadata
 
setDataPadding(int) - Method in class imcacat.jcbf.CbfMetadata
 
setDataSize(int) - Method in class imcacat.jcbf.CbfMetadata
 
setDataWidth(int) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderAlpha(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderAngleIncrement(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderBeamXY(float[]) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderChi(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderChiIncrement(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderComment(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderConvention(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderCountCutoff(Integer) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDate(Date) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDefaults() - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDetector(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDetector2Theta(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDetectorDistance(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderDetectorVOffset(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderEnergyRange(float[]) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderExcludedPixels(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderExposurePeriod(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderExposureTime(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderFilterTransmission(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderFlatField(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderFlux(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderFluxString(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderGainType(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderGainVrf(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderImagePath(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderKappa(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderNumExcludedPixels(Integer) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderNumOscillations(Integer) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderOmega(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderOmegaIncrement(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderOscillationAxis(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderPhi(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderPhiIncrement(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderPixelSize(float[]) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderPolarization(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderPositionIncrement(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderSensorThickness(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderSensorType(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderShutterTime(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderStartAngle(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderStartPosition(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderTau(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderThreshold(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderTrim(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderTrimDirectory(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderTrimFile(String) - Method in class imcacat.jcbf.CbfMetadata
 
setHeaderWavelength(Float) - Method in class imcacat.jcbf.CbfMetadata
 
setIdentifier(String) - Method in class imcacat.jcbf.CbfMetadata
 
setInput(Object, boolean, boolean) - Method in class imcacat.jcbf.CbfImageReader
 
setMinimizeMemoryUse(boolean) - Method in class imcacat.jcbf.CbfImageReadParam
Sets whether memory use during an image read should be minimized.
shouldMinimizeMemoryUse() - Method in class imcacat.jcbf.CbfImageReadParam
Indicates whether memory use during an image read should be minimized.
skipBytes(int) - Method in class imcacat.jcbf.ByteArrayCbfData
 
skipBytes(int) - Method in interface imcacat.jcbf.CbfData
 
skipBytes(int) - Method in class imcacat.jcbf.ImageInputStreamCbfData
 

T

toContentTypeConversions() - Method in enum imcacat.jcbf.CbfCompression
 
toXBinaryElementType() - Method in enum imcacat.jcbf.CbfElementType
 

V

valueOf(String) - Static method in enum imcacat.jcbf.CbfCompression
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum imcacat.jcbf.CbfElementType
Returns the enum constant of this type with the specified name.
values() - Static method in enum imcacat.jcbf.CbfCompression
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum imcacat.jcbf.CbfElementType
Returns an array containing the constants of this enum type, in the order they are declared.
Version - Class in imcacat.jcbf
I provide the version identifier for this library.
Version() - Constructor for class imcacat.jcbf.Version
 

W

write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class imcacat.jcbf.CbfImageWriter
 
A B C D E F G I M N O P R S T V W